% Introduction

@string{US = {United States}}
@string{DOE = {Department Of Energy}}
@string{PPCF = {Plasma Phys. Control. Fusion}}
@string{POP = {Physics of Plasmas}}
@string{NJP = {New J. Physics}}
@string{JNM = {J. Nucl. Materials}}
@string{NUF = {Nucl. Fusion}}
@string{PPPL = {Princeton Plasma Physics Laboratory}}
@string{OUP = {Oxford University Press}}
@string{CUP = {Cambridge University Press}}
@string{CPP = {Contrib. Plasma Phys.}}
@string{PRL = {Phys. Rev. Lett.}}
@string{PLA = {Phys. Lett. A}}
@string{JPFR = {J. Plasma Fusion Res.}}
@string{RSI = {Rev. Sci. Inst.}}
@string{PRE = {Phys. Rev. E}}
@string{JFM = {J. Fluid Mech.}}
@string{AJ = {Astrophys. J.}}
@string{APJ = {The Astrophysical Journal}}
@string{JCP = {J. Comput. Phys.}}
@string{CIP = {Comp. in Phys.}}
@string{CiCP = {Comm. in Comput. Phys.}}
@string{JPCS = {Journal of Physics: Conference Series}}
@string{CPC = {Comp. Phys. Comm.}}

%% HDF5

@Misc{hdf5-www,
  author =	 {{The HDF Group}},
  title =	 {{HDF5}},
  note =	 {{http://www.hdfgroup.org/HDF5/index.html}}
}

%% netCDF

@Article{brown-1993,
  author = 	 "Brown, S A and Folk, M and Goucher, G and Rew, R",
  title = 	 {Software for Portable Scientific Data Management},
  journal = 	 {Computers in Physics},
  year = 	 1993,
  volume =	 7,
  number =	 3,
  pages =	 {pp. 304-308}
}

@Misc{netcdf-www,
  author =	 {Unidata},
  title =	 {{netCDF}},
  note =	 {http://www.unidata.ucar.edu/software/netcdf/}
}

%% Orszag-Tang vortex

@Article{londrillo-2000,
  author = 	 "Londrillo, P and Del Zanna, L",
  title = 	 {High-Order Upwind Schemes for Multidimensional Magnetohydrodynamics},
  journal = 	 AJ,
  year = 	 2000,
  volume = 	 530,
  pages = 	 {508-524}
}

@Article{ryu-1998,
  author = 	 "Ryu, D and Miniati, F and Jones, T W and Frank, A",
  title = 	 {A Divergence-free Upwind Code for Multidimensional Magnetohydrodynamic Flows},
  journal = 	 APJ,
  year = 	 1998,
  volume =	 509,
  pages =	 {244-255}
}

@Article{jiang-1999,
  author = 	 "Jiang, Guang-Shan and Wu, Cheng-chin",
  title = 	 {A High-Order WENO Finite Difference Scheme for the Equations of Ideal Magnetohydrodynamics},
  journal = 	 JCP,
  year = 	 1999,
  volume =	 150,
  pages =	 {561-594}
}

@Article{zhang-2006,
  author = 	 "Moujin Zhang and John Yu, S -T  and Henry Lin, S -C and Sin-Chung Chang and Isaiah Blankson",
  title = 	 {Solving the {MHD} equations by the space-time conservation element and solution element method},
  journal = 	 JCP,
  year = 	 2006,
  volume =	 214,
  pages =	 {599-617}
}

%% OpenFOAM

@Article{weller-1998,
  author = 	 "Weller, H G and Tabor, G and Jasak, H and Fureby, C",
  title = 	 {A Tensorial Approach to {CFD} using Object Orientated Techniques},
  journal = 	 CIP,
  year = 	 1998,
  volume =	 12,
  number =	 6,
  pages =	 {pp 620 - 631}
}

@Article{jasak-1998,
  author = 	 "Jasak, H and Weller, H G and Gosman, A D",
  title = 	 {High resolution {NVD} differencing scheme for arbitrarily unstructured meshes},
  journal = 	 {Int. J. Numer. Meth. Fluids},
  year = 	 1999,
  volume =	 31,
  pages =	 {pp 431-449}
}

@InProceedings{jasak-2004,
  author = 	 "Jasak, H and Weller, H G and Nordin, N",
  title = 	 {In-Cylinder {CFD} Simulation Using a {C++} Object-Oriented Toolkit},
  booktitle =	 {SAE World Congress, Detroit},
  year =	 2004,
  number =	 {2004-01-0110},
  address =	 {http://www.foamcfd.org/resources/resources.html}
}

@InProceedings{kruger-2001,
  author = 	 "Kruger, S E and Sovinec, C R and Schnack, D D",
  title = 	 {Vacuum simulations with the {NIMROD} code},
  booktitle =	 {Sherwood theory meeting},
  year =	 2001,
  address =	 {https://nimrodteam.org/presentations/index.html}
}

@Article{umansky-2008-tests,
  author = 	 "Umansky, M V and Cohen, R H and LoDestro, L L and Xu, X Q",
  title = 	 {Suite of Verification Test Problems for Edge Turbulence Simulations},
  journal = 	 CPP,
  year = 	 2008,
  volume = 	 48,
  number = 	 {1-3},
  pages = 	 {27-31},
  note = 	 {http://dx.doi.org/10.1002/ctpp.200810004}
}

@Article{knuth-1974,
  author = 	 "Knuth, D",
  title = 	 {Structured Programming with go to Statements},
  journal = 	 {ACM Journal Computing Surveys},
  year = 	 1974,
  volume =	 6,
  number =	 4,
  pages =	 268
}

% coordinate systems

@Book{lovelock-1989,
  author = 	 {Lovelock, D and Rund, H},
  title = 	 {Tensors, Differential Forms, and Variational Principles},
  publisher = 	 {Dover},
  year = 	 1989,
  number = 	 {ISBN 0-486-65840-6}}

% ATHENA

@Article{stone-2008,
  author = 	 "Stone, J M and Gardiner, T A and Teuben, P and Hawley, J F and Simon, J B",
  title = 	 {Athena: A New Code for Astrophysical {MHD}},
  journal = 	 {eprint arXiv:0804.0402},
  year = 	 2008}

% NIMROD

@Article{sovinec-2004,
  author = 	 "Sovinec, C R and Glasser, A H and Barnes, D C and Gianakon, T A and Nebel, R A and Kruger, S E and Schnack, D D and Plimpton, S J and Tarditi, A and Chu, M S and the {NIMROD} Team",
  title = 	 {Nonlinear magnetohydrodynamics simulation using high-order finite elements},
  journal = 	 JCP,
  year = 	 2004,
  volume =	 195,
  pages =	 {355-386}
}

@Article{sovinec-2007,
  author = 	 "Sovinec, C R and Barnes, D C and Bayliss, R A and Brennan, D P and Held, E D and Kruger, S E and Pankin, A Y and Schnack, D D and the {NIMROD} Team",
  title = 	 {Two-fluid studies of edge relaxation events in tokamaks},
  journal = 	 JPCS,
  year = 	 2007,
  volume =	 78,
  pages =	 012070
}

@Article{brennan-2006,
  author = 	 "Brennan, D P and Kruger, S E and Schnack, D D and Sovinec, C R and Pankin, A Y",
  title = 	 {Computing nonlinear magnetohydrodynamic edge localized instabilities in fusion plasmas},
  journal = 	 JPCS,
  year = 	 2006,
  volume =	 46,
  pages =	 {63-72}
}

@Article{pankin-2007,
  author = 	 "Pankin, A Y and others",
  title = 	 {Modelling of {ELM} dynamics for {DIII-D} and {ITER}},
  journal = 	 PPCF,
  year = 	 2007,
  volume =	 49,
  pages =	 {S63-S75}
}

% JOREK

@Article{huysmans-2007,
  author = 	 "Huysmans, G T A and Czarny, O",
  title = 	 {{MHD} stability in X-point geometry: simulation of {ELMs}},
  journal = 	 NUF,
  year = 	 2007,
  volume =	 47,
  pages =	 {659-666}
}

% GEM

@Article{scott-2005,
  author = 	 "Scott, B",
  title =        "Free-energy conservation in local gyrofluid models",
  journal = 	 POP,
  year = 	 2005,
  pages =	 102307,
  volume =	 12
}

@Article{scott-2006,
  author = 	 "Scott, B",
  title =        "Gyrokinetic study of the edge shear layer",
  journal = 	 PPCF,
  year = 	 2006,
  volume =	 48,
  pages =        {A387}
}

% M3D

@Article{park-1999,
  author = 	 "Park, W and others",
  title =        "Plasma simulation studies using multilevel physics models",
  journal = 	 POP,
  year = 	 1999,
  volume =	 6,
  pages =	 1796
}

@ARTICLE{sugiyama-2006,
   author = "Sugiyama, L and Strauss, H R and Breslau, J B and Park, G Y",
    title = "{Simulation of ELM Instabilities using Extended MHD}",
  journal = {APS Meeting},
     year = 2006,
    month = oct,
}

@Article{park-2007,
  author = 	 "Park, G and Cummings, J and Chang, C S and Podhorszki, N and Klasky, S and Ku, S and Pankin, A and Samtaney, R and Shoshani, A and Snyder, P and Strauss, H and Sugiyama, L and the {CPES} team",
  title = 	 {Coupled simulation of kinetic pedestal growth and {MHD ELM} crash},
  journal = 	 JPCS,
  year = 	 2007,
  volume =	 78,
  pages =	 012087
}

% ACTS collection

@Misc{acts,
  title =	 {{Advanced CompuTational Software collection, US DOE}},
  howpublished = {http://acts.nersc.gov}
}

% ELITE

@Article{wilson-2002,
  author = 	 "Wilson, H R and Snyder, P B and Huysmans, G T A and Miller, R L",
  title = 	 {Numerical studies of edge localized instabilities in tokamaks},
  journal = 	 POP,
  year = 	 2002,
  volume =	 9,
  pages =	 1277,
  month =	 {April}
}

% PDB library

@Misc{pact-llnl,
  title =	 {Portable Application Code Toolkit},
  howpublished = {https://wci.llnl.gov/codes/pact/}
}

% Linear ELM stability boundary

@Article{connor-1998,
  author = 	 "Connor, J W and Hastie, R J and Wilson, H R and Miller, R L",
  title = 	 {Magnetohydrodynamic stability of tokamak edge plasmas},
  journal = 	 POP,
  year = 	 1998,
  volume =	 5,
  pages =	 2687
}

@Article{hegna-1996,
  author = 	 "Hegna, C C and Connor, J W and Hastie, R J and Wilson, H R",
  title = 	 {Toroidal coupling of ideal magnetohydrodynamic instabilities in tokamak plasmas},
  journal = 	 POP,
  year = 	 1996,
  volume =	 3,
  pages =	 584
}

@Article{snyder-2002,
  author = 	 "Snyder, P B and Wilson, H R and Ferron, J R and Lao, L L and Leonard, A W and Osborne, T H and Turnbull, A D and Mossessian, D and Murakami, M and Xu, X Q",
  title = 	 {Edge localized modes and the pedestal: A model based on coupled peeling–ballooning modes},
  journal = 	 POP,
  year = 	 2002,
  volume =	 9,
  pages =	 2037
}

% Non-linear analytic theory

@Article{wilson-2004,
  author = 	 "Wilson, H R and Cowley, S C",
  title = 	 {Theory for Explosive Ideal Magnetohydrodynamic Instabilities in Plasmas},
  journal = 	 PRL,
  year = 	 2004,
  volume =	 92,
  pages =	 175006
}

@Article{zhu-2007,
  author = 	 "Zhu, P and Hegna, C C and Sovinec, C R and Bhattacharjee, A and Germaschewski, K",
  title = 	 {Intermediate nonlinear regime of a line-tied g mode},
  journal = 	 POP,
  year = 	 2007,
  volume =	 14,
  pages =	 055903
}

% MHD test problems

Infeld, E. and Rowlands, G. Nonlinear Waves, Solitons, and Chaos, 2nd ed. Cambridge, England: Cambridge University Press, 2000.

@Book{infeld-2000,
  author =	 "Infeld, E and Rowlands, G",
  title = 	 {Nonlinear Waves, Solitons, and Chaos, 2nd ed.},
  publisher = 	 CUP,
  year = 	 2000,
  key =		 {ISBN 0521632129}
}

@Article{dai-1998,
  author = 	 "Dai, W and Woodward, P R",
  title = 	 {On the divergence-free condition and conservation laws in numerical simulations for supersonic magnetohydrodynamic flows},
  journal = 	 AJ,
  year = 	 1998,
  volume =	 494,
  pages =	 {317-335}
}

@Article{orszag-1979,
  author = 	 "Orszag, S A and Tang, C-M",
  title = 	 {Small-scale structure of two-dimensional magnetohydrodynamic turbulence},
  journal = 	 JFM,
  year = 	 1979,
  volume =	 90,
  pages =	 {129-143}
}

Orszag and Tang, J. Fluid Mech. (1979)

% WENO references

@Article{jiang-1997,
  author =       "Jiang, Guang-Shan and Peng, Danping",
  title =        "Weighted {ENO} Schemes for {Hamilton-Jacobi} Equations",
  journal =      "{SIAM} J. Sci. Comp.",
  year =         2000,
  volume =       {21},
  number =       {6},
  pages =        {2126--2143},
  url = "citeseer.ist.psu.edu/jiang97weighted.html",
}

@Article{jiang-1996,
  author = 	 "Jiang, Guang-Shan and Shu, Chi-Wang",
  title = 	 "Efficient Implementation of {Weighted ENO} Schemes",
  journal = 	 JCP,
  year = 	 1996,
  key =		 0130,
  volume =	 126,
  pages =	 {202-228}
}

@Article{levy-1999,
  author = 	 "Levy, D and Puppo, G and Russo, G",
  title = 	 "Compact {Central WENO} Schemes for Multidimensional Conservation Laws",
  journal = 	 {eprint arXiv:math},
  year = 	 1999,
  pages =        9911089,
  month =	 {Nov}
}

@Article{bryson-2003,
  author = 	 "Bryson, S and Levy, D",
  title = 	 "High-Order {Central WENO} Schemes for 1D Hamilton-Jacobi Equations",
  journal = 	 {SIAM J. Num. Analysis.},
  year = 	 2003,
  volume =	 41,
  pages =	 {1339-1369}
}

@Article{dimits-1993,
  author = 	 "Dimits, A M",
  title = 	 {{Fluid simulations of tokamak turbulence in quasiballooning coordinates}},
  journal = 	 PRE,
  year = 	 1993,
  volume = 	 48,
  number = 	 5,
  pages = 	 {4070-4079},
  month = 	 {Nov}}

@InProceedings{hnat-2007,
  author = 	 "Hnat, B and Dudson, B D and Dendy, R O and Counsell, G F and Kirk, A and {the MAST team}",
  title = 	 {{Statistical properties of L-mode edge plasma turbulence for three different magnetic configurations in the Mega Amp Spherical Tokamak}},
  booktitle =	 {{$34^{th}$ EPS Conference on Plasma Physics}},
  year =	 2007,
  address =	 {Warsaw, Poland},
  month =	 {July}
}

@Article{kolmogorov-1941,
  author = 	 "Kolmogorov, A N",
  title = 	 {{Local structure of turbulence in an incompressible fluid for very large Reynolds numbers}},
  journal = 	 {{Doklady Academii. Nauk SSSR}},
  year = 	 1941,
  volume =	 30,
  pages =	 301
}

@Book{dendy-1993,
  editor =	 "Dendy, R",
  title = 	 {Plasma Physics: An introductory course},
  publisher = 	 CUP,
  year = 	 1993,
  key =		 {ISBN 0-521-48452-9}
}

@Article{grad-1949,
  author = 	 "Grad, H",
  title = 	 {On the Kinetic Theory of Rarefied Gases},
  journal = 	 {Comm. Pure Appl. Math.},
  year = 	 1949,
  volume =	 2,
  pages =	 325
}

@Book{hazeltine-2003,
  author =	 "Hazeltine, R D and Meiss, J D",
  title = 	 {{Plasma Confinement}},
  publisher = 	 {Dover publications},
  year = 	 2003,
  key =		 {ISBN 0-486-43242-4}
}

@Misc{carolus-2001,
  title =	 {{Fifth Carolus Magnus Euro-Summer School: lecture notes}},
  month =	 {September},
  year =	 2001,
  note =	 {{Bad Honnef, Germany}}
}

@Book{atzeni-2004,
  author =	 "Meyer-Ter-Vehn, J and Atzeni, S",
  title = 	 {{The Physics of Inertial Fusion: Chapter 1. Nuclear Fusion Reactions}},
  publisher = 	 OUP,
  year = 	 2004,
  key =		 {ISBN 978-0198562641},
  note =	 {Available from http://www.oup.co.uk/pdf/0198562640.pdf}
}

@Misc{EIA,
  title =	 "{Energy Information Administration} {(US DOE)}",
  howpublished = {http://eia.doe.gov}
}

@Misc{top500,
  title =        {Top 500 Supercomputer sites},
  howpublished = {http://top500.org}
}

@Misc{IPP,
  title =	 {Max-Planck Institute for Plasma Physics},
  howpublished = {http://www.ipp.mpg.de}
}

@Misc{MFE,
  title =        {Fusion Energy Program, {LLNL}},
  howpublished = {http://www.mfescience.org}
}

@Misc{xuhomepage,
  title = {Personal info for Xueqiao Xu},
  howpublished = {http://www.mfescience.org/users/xu/}
}  

@Book{wesson-1997,
  editor =	 "Wesson, J A",
  title = 	 {Tokamaks},
  publisher = 	 {Clarendon Press},
  year = 	 1997,
  key =		 {ISBN 0-19-856293-4},
  edition =	 2
}

@Book{stangeby-2000,
  author =	 "Stangeby, P C",
  title = 	 {{The Plasma Boundary of Magnetic Fusion Devices}},
  publisher = 	 {IoP},
  year = 	 2000,
  key =		 {ISBN 0-7503-0559-2}
}

@Book{davidson-2004,
  author =	 "Davidson, P A",
  title = 	 {Turbulence},
  publisher = 	 OUP,
  year = 	 2004,
  key =		 {ISBN 0-19-852949-1}
}

@Book{biskamp-2003,
  author =	 "Biskamp, D",
  title = 	 {{Magnetohydrodynamic Turbulence}},
  publisher = 	 CUP,
  year = 	 2003,
  key =		 {ISBN 0-521-81011-6}
}

@Article{kirk-1,
  author = 	 "Kirk,A and Counsell,G F and Fundamenski,W and Ahn,J-W and Taylor,D and Walsh, M J and Yang, Y",
  title = 	 {{A comparison of mid-plane scrape-off-layer measurements with model predictions in MAST and the calculation of cross-field transport coefficients}},
  journal = 	 PPCF,
  year = 	 2004,
  volume =	 46,
  pages =	 {1591-1603}
}

@Article{sauter-1,
  author = 	 "Sauter,O and Angioni,C and Lin-Liu, Y R",
  title = 	 {{Neoclassical conductivity and bootstrap current formulas for general axisymmetric equilibria and arbitrary collisionality regime}},
  journal = 	 POP,
  year = 	 1999,
  volume =	 6,
  number =	 7,
  pages =	 {2834-2839}
}

%% EFIT references

@Misc{efit_culham,
  title =        {{EFIT} Equilibrium Code at Culham},
  howpublished = {http://fusion.org.uk/EFIT/}
}

@Article{lao-1985,
  author = 	 "Lao, L L and St. John, H and Stambaugh, R D and Kellman, A G and Pfeiffer, W",
  title = 	 {{Reconstruction of current profile parameters and plasma shapes in tokamaks}},
  journal = 	 NUF,
  year = 	 1985,
  volume =	 25,
  pages =	 {1611-22}
}

@Article{lao-2005,
  author = 	 "Lao, L L and others",
  title = 	 {{MHD} equilibrium reconstruction in the {DIII-D} tokamak},
  journal = 	 {{Fusion Science and technology}},
  year = 	 2005,
  volume =	 48,
  pages =	 "p968"
}

@Article{obrien-1992,
  author = 	 "O'Brien, D P and Lao, L L and Solano, E R and Garribba, M and Taylor, T S and Cordey, J G and Ellis, J J",
  title = 	 {{Equilibrium analysis of iron core tokamaks using a full domain method}},
  journal = 	 NUF,
  year = 	 1992,
  volume =	 32,
  pages =	 {p1351}
}

@Article{zwingmann-2003,
  author = 	 "Zwingmann, W",
  title = 	 {{Equilibrium analysis of steady state tokamak discharges}},
  journal = 	 NUF,
  year = 	 2003,
  volume =	 43,
  pages =	 "p842"
}

%% Theory section


@InCollection{braginskii-1,
  author = 	 "Braginskii, S I",
  title = 	 {T{ransport processes in a plasma}},
  booktitle = 	 {Reviews of Plasma Physics},
  pages =	 {205-311},
  publisher =	 {Consultants Bureau, New York},
  year =	 1965,
  editor =	 "Leontovich, M A",
  volume =	 1
}

@Article{yoshizawa-1,
  author = 	 "Yoshizawa, A and Itoh, S-I and Itoh,K and Yokoi, N",
  title = 	 {{Turbulence theories and modelling of fluids and plasmas}},
  journal = 	 PPCF,
  year = 	 2001,
  volume =	 43,
  pages =	 {R1-R144}
}

@TechReport{krommes-2001,
  author = 	 "Krommes, J A",
  title = 	 {{Fundamental Statistical Descriptions of Plasma Turbulence in Magnetic Fields}},
  institution =  PPPL,
  year = 	 2001,
  key =		 {PPPL-3546},
  month =	 {Febuary}
}

@Book{chen-1,
  author =	 "Chen, F",
  title = 	 {{Introduction to plasma physics and controlled fusion}},
  publisher = 	 {Plenum Press},
  year = 	 1984,
  key =		 {ISBN 0-306-41332-9},
  volume =	 1,
  edition =	 2
}

@Article{horton-1999,
  author = 	 "Horton, W",
  title = 	 {{Drift waves and transport}},
  journal = 	 {Rev. Modern Physics},
  year = 	 1999,
  volume =	 71,
  number =	 3,
  pages =	 {735-773},
  month =	 {April}
}


@Article{naulin-2002,
  author = 	 "Naulin, V",
  title = 	 {{Aspects of flow generation and saturation in drift-wave turbulence}},
  journal = 	 NJP,
  year = 	 2002,
  volume =	 4,
  pages =	 {28.1-28.18},
  month =	 {May}
}


@Article{callen-1977,
  author = 	 "Callen, J D",
  title = 	 {{Drift-Wave Turbulence Effects on Magnetic Structure and Plasma Transport in Tokamaks}},
  journal = 	 {Physical Rev. Lett},
  year = 	 1977,
  volume =	 39,
  number =	 24,
  pages =	 {1540-1543},
  month =	 {December}
}

@Article{scott-2002,
  author = 	 "Scott, B D",
  title = 	 {{The nonlinear drift wave instability and its role in tokamak edge turbulence}},
  journal = 	 NJP,
  year = 	 2002,
  volume =	 4,
  pages =	 {52.1-52.30},
  month =	 {July}
}

%% BOUT section

@Article{xu-2008,
  author = 	 "Xu, X Q and Umansky, M V and Dudson, B and Snyder, P B",
  title = 	 {Boundary Plasma Turbulence Simulations for Tokamaks},
  journal = 	 CiCP,
  year = 	 2008,
  volume =	 4,
  number =	 5,
  pages =	 {pp. 949-979},
  month =	 {November}
}

@Article{simakov-2003,
  author = 	 "Simakov, A N and Catto, P J",
  title = 	 {{Drift-ordered fluid equations for field-aligned modes in low-$\beta$ collisional plasma with equilibrium pressure pedestals}},
  journal = 	 POP,
  year = 	 2003,
  volume =	 10,
  number =	 12,
  pages =	 {pp. 4744-4757},
  month =	 {December}
}

@Article{catto-2004,
  author = 	 "Catto, P J and Simakov, A N",
  title = 	 {{A drift ordered short mean free path description for magnetized plasma allowing strong spatial anisotropy}},
  journal = 	 POP,
  year = 	 2004,
  volume =	 11,
  number =	 1,
  pages =	 {pp. 90-102},
  month =	 {January}
}

@Article{simakov-2004,
  author = 	 "Simakov, A N and Catto, P J",
  title = 	 {{Erratum: ``Drift-ordered fluid equations for field-aligned modes in low-$\beta$ collisional plasma with equilibrium pressure pedestals''}},
  journal = 	 POP,
  year = 	 2004,
  volume =	 11,
  number =	 5,
  pages =	 {p.2326},
  month =	 {May}
}

@Article{myra-2006-2,
  author = 	 "Myra, J R and Russel, D A and D'Ippolito, D A",
  title = 	 {{Collisionality and magnetic geometry effects on edge turbulent transport: I. A two-region model with application to blobs}},
  journal = 	 {Submitted to POP},
  year = 	 2006,
  month =	 {June}
}

@Article{myra-2000,
  author = 	 "Myra, J R and D'Ippolito, D A and Xu, X Q and Cohen, R H",
  title = 	 {{MHD and Fluid Instabilities at the Plasma Edge in the Presence of a Separatrix and X-Point}},
  journal = 	 {Contrib. Plas. Phys.},
  year = 	 2000,
  volume =	 40,
  number =	 {3-4},
  pages =	 {352-361}
}

@Article{myra-2002,
  author = 	 "Myra, J R and D'Ippolito, D A and Xu X Q",
  title = 	 {{Drift wave instability near a magnetic separatrix}},
  journal = 	 POP,
  year = 	 2002,
  volume =	 9,
  number =	 5,
  pages =	 {1637-1645}
}

@Article{rognlien-2002,
  author = 	 "Rognlien, T D and Xu, X Q and Hindmarsh, A C",
  title = 	 {{Application of Parallel Implicit Methods to Edge-Plasma Numerical Simulations}},
  journal = 	 {J. Comput. Phys.},
  year = 	 2002,
  volume =	 175,
  pages =	 {249-268}
}

@Article{xu-1999,
  author = 	 "Xu, X Q and Cohen, R H and Porter, G D and Myra, J R and D'Ippolito, D A and Moyer, R",
  title = 	 {{Turbulence in Boundary Plasmas}},
  journal = 	 JNM,
  year = 	 1999,
  volume =	 {266-269},
  pages =	 {993-996}
}

@Article{xu-2002,
  author = 	 "Xu, X Q and Nevins, W M and Cohen, R H and Myra, J R and Snyder, P B",
  title = 	 {{Dynamical simulations of boundary plasma turbulence in divertor geometry}},
  journal = 	 NJP,
  year = 	 2002,
  volume =	 4,
  pages =	 {53.1-53.15}
}

@Article{xu-2000,
  author = 	 "Xu, X Q and Cohen, R H and Porter, G D and Rognlien, T D and Ryutov, D D and Myra, J R and D'Ippolito, D A and Moyer, R A and Groebner, R J",
  title = 	 {{Turbulence studies in tokamak boundary plasmas with realistic divertor geometry}},
  journal = 	 NUF,
  year = 	 2000,
  volume =	 40,
  number =	 {3Y},
  pages =	 {731-736}
}

@Article{xu-2000-pop,
  author = 	 "Xu, X Q and Cohen, R H and Rognlien, T D and Myra, J R",
  title = 	 "Low-to-high confinement transition simulations in divertor geometry",
  journal = 	 POP,
  year = 	 2000,
  volume = 	 7,
  pages = 	 1951
}

@Article{russel-2004,
  author = 	 "Russell, D A and D'Ippolito, D A and Myra, J R and Nevins, W M and Xu, X Q",
  title = 	 {{Blob Dynamics in 3D BOUT Simulations of Tokamak Edge Turbulence}},
  journal = 	 PRL,
  year = 	 2004,
  volume =	 93,
  pages =	 265001
}

@Article{umansky-2005,
  author = 	 "Umansky, M V and Rognlien, T D and Xu, X Q",
  title = 	 {{Simulation of turbulence in the divertor region of tokamak edge plasma}},
  journal = 	 JNM,
  year = 	 2005,
  volume =	 {337-339},
  pages =	 {266-270}
}

@InProceedings{xu-2004,
  author = 	 "Xu, X Q and Cohen, R H and Nevins, W M and Rognlien, T D and Ryutov, D D and Umansky, M V and Pearlstein, L D and Bulmer, R H and Russell, D A and Myra, J R and D'Ippolito, D A and Greenwald, M and Snyder, P B and Mahdavi, M A",
  title = 	 {{Density Effects on Tokamak Edge Turbulence and Transport with Magnetic X-points}},
  key =		 {IAEA-CN-116/TH/1-5},
  booktitle =	 {20th Fusion Energy Conference},
  year =	 2004,
  address =	 {Vilamoura, Portugal},
  month =	 {November},
  organization = {IAEA}
}

@Article{xu-1998,
  author = 	 "Xu, X Q and Cohen, R H",
  title = 	 {{Scrape-Off Layer Turbulence Theory and Simulations}},
  journal = 	 CPP,
  year = 	 1998,
  volume =	 38,
  number =	 {1-2},
  pages =	 158
}

@Article{xu-2004-cpp,
  author = 	 "Xu, X Q and Nevins, W M and Cohen, R H and Rognlien, T D and Umansky, M V",
  title = 	 {{Correlation of Density Pedestal Width and Neutral Penetration Length}},
  journal = 	 CPP,
  year = 	 2004,
  volume =	 44,
  number =	 {1-3},
  pages =	 {105-110}
}

@Article{myra00_resis,
  author = 	 "Myra, J R and D'Ippolito, D A and Xu, X Q and Cohen, R H",
  title = 	 {{Resistive modes in the edge and scrape-off layer of diverted tokamaks}},
  journal = 	 POP,
  year = 	 2000,
  volume =	 7,
  number =	 11,
  pages =	 {4622-4631},
  month =	 {November}
}

@Article{dippolito02_cross,
  author = 	 "D'Ippolito, D A and Myra, J R and Krasheninnikov, S I",
  title = 	 {{Cross-field blob transport in tokamak scrape-off-layer plasmas}},
  journal = 	 POP,
  year = 	 2002,
  volume =	 9,
  number =	 1,
  pages =	 {222-233},
  month =	 {January}
}

@InProceedings{cohen-2006,
  author = 	 "Cohen, R H and LaBombard, B and LoDestro, L L and Rognlien, T D and Ryutov, D D and Terry, J L and Umansky, M V and Xu, X Q and Zweben, S",
  title = 	 {{Fluid Simulations and Theory of Boundary Plasma Fluctuations}},
  key =		 {TH/P6-25},
  booktitle =	 {21st Fusion Energy Conference},
  year =	 2006,
  address =	 {Chengdu, China},
  month =	 {October},
  organization = {IAEA}
}

@Article{yu-2006,
  author = 	 "Yu, G Q and Krasheninnikov, S I and Guzdar, P N",
  title = 	 {{Two-dimensional modelling of blob dynamics in tokamak edge plasmas}},
  journal = 	 POP,
  year = 	 2006,
  key =		 042508,
  volume =	 13,
  month =	 {April}
}



@Article{krasheninnikov-2004,
  author = 	 "Krasheninnikov, S I and Ryutov, D D and Yu, G Q",
  title = 	 {{Large Plasma Pressure Perturbations and Radial Convective Transport in a Tokamak}},
  journal = 	 JPFR,
  year = 	 2004,
  volume =	 6,
  pages =	 {139-143}
}

@InProceedings{umansky-2006,
  author = 	 {Umansky, M V and Rognlien, T D and Xu, X Q and Dudson, B D and Kirk, A},
  title = 	 {{Modelling of edge plasma turbulence in a spherical tokamak}},
  OPTcrossref =  {},
  OPTkey = 	 {},
  OPTbooktitle = {},
  OPTpages = 	 {},
  year = 	 {2006},
  OPTeditor = 	 {},
  OPTvolume = 	 {},
  OPTnumber = 	 {},
  OPTseries = 	 {},
  OPTaddress = 	 {},
  OPTmonth = 	 {},
  OPTorganization = {},
  OPTpublisher = {},
  OPTnote = 	 {},
  OPTannote = 	 {}
}

@InProceedings{snyder-2006,
  author = 	 "Snyder, P B and Wilson, H R and Xu, X Q",
  title = 	 {{Nonlinear 3D Simulations of ELMs with the BOUT code}},
  booktitle =	 {{Fluid Modelling of ELMs Workshop}},
  year =	 2006,
  address =	 {Boulder, Colorado},
  month =	 {January}
}

@Article{snyder-2005,
  author = 	 "Snyder, P B and Wilson, H R and Xu, X Q",
  title = 	 {{Progress in the peeling-ballooning model of edge localized modes: Numerical studies of nonlinear dynamics}},
  journal = 	 POP,
  year = 	 2005,
  pages =	 056115,
  volume =	 12,
  month =	 {May}
}

%% Statistical methods section

@Article{zweben-1983,
  author = 	 "Zweben, S J and Gould, R W",
  title = 	 {{Scaing of edge-plasma turbulence in the {CALTECH} tokamak}},
  journal = 	 NUF,
  year = 	 1983,
  volume =	 23,
  number =	 12,
  pages =	 {pp.1625-1641}
}

@Article{zweben-1985,
  author = 	 "Zweben, S J and Gould, R W",
  title = 	 {{Structure of edge-plasma turbulence in the {CALTECH} tokamak}},
  journal = 	 NUF,
  year = 	 1985,
  volume =	 25,
  number =	 2,
  pages =	 {pp.171-183}
}

@InProceedings{milligen-1996,
  author = 	 "van Milligen, B Ph and Hidalgo, C and Sanchez, E and Pedrosa, M A and Balbin, R and Garcia-Cortes, I",
  title = 	 {{Analysis of Plasma Edge Turbulence with Statistically Robust Linear and Non-Linear Wavelet Analysis Techniques}},
  booktitle =	 {EPS 10 ``Trends in Physics'' Conference, Seville},
  year =	 1996,
  month =	 {September}
}

@Article{garcia-cortes-1996,
  author = 	 "Garcia-Cortes, I and Hidalgo, C and Martin-Solis, J R and Ali-Arshad, S and Clement, S and Davies, S J and Linertat, J and Loarte, A and Matthews, G F and Monk, R D",
  title = 	 {{Characterization of fluctuations in the {JET} Divertor plasmas with Langmuir probes}},
  journal = 	 PPCF,
  year = 	 1996,
  volume =	 38,
  pages =	 {pp.2051-2062}
}

@Article{sattin-2006,
  author = 	 "Sattin, F and Scarin, P and Agostini, M and Cavazzana, R and Serianni, G and Spolaore, M and Vianello, N",
  title = 	 {{Statistical features of edge turbulence in {RFX}-mod from gas puffing imaging}},
  journal = 	 PPCF,
  year = 	 2006,
  volume =	 48,
  pages =	 {pp.1033-1051}
}

@Article{nishino-2006,
  author = 	 "Nishino, N",
  title = 	 {{Model of filament structure in a turbulent plasma edge}},
  journal = 	 NUF,
  year = 	 2006,
  volume =	 46,
  pages =	 {S658-S664}
}

@Article{garcia-2006-1,
  author = 	 "Garcia, O E and Horacek, J and Pitts, R A and Nielsen, A H and Fundamenski, W and Graves, J P and Naulin, V and Rasmussen, J J",
  title = 	 {{Interchange turbulence in the {TCV} scrape-off layer}},
  journal = 	 PPCF,
  year = 	 2006,
  volume =	 48,
  pages =	 {L1-L10}
}

@Article{garcia-2006-2,
  author = 	 "Garcia, O E and Naulin, V and Nielsen, A H and Rasmussen, J J",
  title = 	 {{Turbulence simulations of blob formation and radial propagation in toroidally magnetized plasmas}},
  journal = 	 {Physica Scripta},
  year = 	 2006,
  volume =	 {T122},
  pages =	 {89-103}
}

@Article{garcia-2006-3,
  author = 	 "Garcia, O E and Bian, N H and Fundamenski, W",
  title = 	 {{Radial interchange motions of plasma filaments}},
  journal = 	 POP,
  year = 	 2006,
  volume =	 13,
  pages =	 082309
}

@Article{garcia-2005,
  author = 	 "Garcia, O E and Naulin, V and Nielsen, A H and {Juul Rasmussen}, J",
  title = 	 {{Turbulence and intermittent transport at the boundary of magnetized plasmas}},
  journal = 	 POP,
  year = 	 2005,
  key =		 062309,
  volume =	 12
}

@Article{garcia-2005-2,
  author = 	 "Garcia, O E and Bian, N H and Naulin, V and Nielsen, A H and Juul Rasmussen, J",
  title = 	 {{Mechanism and scaling for convection of isolated structures in nonuniformly magnetized plasmas}},
  journal = 	 POP,
  year = 	 2005,
  key =		 090701,
  volume =	 12
}

@Article{krasheninnikov-2001,
  author = 	 "Krasheninnikov, S I",
  title = 	 {{On scrape off layer plasma transport}},
  journal = 	 PLA,
  year = 	 2001,
  volume =	 283,
  pages =	 {368-370},
  month =	 {May}
}

@Article{dippolito-2002,
  author = 	 "D'Ippolito, D A and Myra, J R and Krasheninnikov, S I",
  title = 	 {{Cross-field blob transport in tokamak scrape-off-layer plasmas}},
  journal = 	 POP,
  year = 	 2002,
  volume =	 9,
  number =	 1,
  pages =	 {222-233},
  month =	 {Jan}
}

@InProceedings{grulke-2006-2,
  author = 	 "Grulke, O and Terry, J L and LaBombard, B and Zweben, S J",
  title = 	 {{Radial Propagation of Turbulent Transport Events in the Scrape-Off Layer of Alcator C-Mod}},
  key =		 {TH/P6-25},
  booktitle =	 {21st Fusion Energy Conference},
  year =	 2006,
  address =	 {Chengdu, China},
  month =	 {October},
  organization = {IAEA}
}

@InProceedings{horacek-2006,
  author = 	 "Horacek, J and Garcia, O E and Pitts, R A and Fundamenski, W and Graves, J P and Naulin, V and Nielsen, A H and Juul Rasmussen, J",
  title = 	 {On the origin of anomalous radial transport in the tokamak {SOL}},
  key =		 {EX/P4-21},
  booktitle =	 {21st IAEA Fusion Energy Conference},
  year =	 2006,
  address =	 {Chengdu, China},
  month =	 {October}
}

@PhdThesis{horacek-thesis,
  author = 	 {Jan Horacek},
  title = 	 {Measurement of edge electrostatic turbulence in the {TCV} tokamak plasma boundary},
  school = 	 {La Facult\'e sciences de base, CRPP association Euratom},
  year = 	 2006,
  key =		 {No. 3524},
  month =	 {May}
}

@InProceedings{naulin-2006,
  author = 	"Naulin, V and Fundamenski, W and Nielsen, A H and Juul Rasmussen, J and Garcia, O E and Gon\c{c}alves, B and Hidalgo, C and Hron, M and {JET-EFDA contributors}",
  title = 	 {Turbulence Modelling of {JET} {SOL} plasma},
  key =		 {TH/P6-22},
  booktitle =	 {21st IAEA Fusion Energy Conference},
  year =	 2006,
  address =	 {Chengdu, China},
  month =	 {October}
}

@Book{sornette-2000,
  author =	 "Sornette, D",
  title = 	 {Critical Phenomena in Natural Sciences},
  publisher = 	 {Springer-Verlag},
  year = 	 2000
}


@Book{sprott-2003,
  author =	 "Sprott, J C",
  title = 	 {Chaos and time-series analysis},
  publisher = 	 OUP,
  year = 	 2003,
  key =		 {ISBN 0-19-850840-9}
}

@Article{mandelbrot-1968,
  author = 	 "Mandelbrot, B B and Wallis, J R",
  title = 	 {Noah, Joseph and operational hydrology},
  journal = 	 {Water Resour. Res.},
  year = 	 1968,
  volume =	 4,
  number =	 5,
  pages =	 909
}


@Article{mantegna-1995,
  author = 	 "Mantegna, R N and Stanley, H E",
  title = 	 {Scaling behaviour in the dynamics of an economic index},
  journal = 	 {Nature},
  year = 	 1995,
  volume =	 376,
  pages =	 {46-49}
}


@Article{carreras-1998,
  author = 	 "Carreras, B A and van Milligen, B Ph and Pedrosa, M A and Balbin, R and Hidalgo, C and Newman, D E and Sanchez, E and Frances, M and Garcia-Cortes, I and Bleuel, J and Endler, M and Ricardi, C and Davies, S and Matthews, G F and Martines, E and Antoni, V and Latten, A and Klinger, T",
  title = 	 {Self-similarity of the plasma edge fluctuations},
  journal = 	 POP,
  year = 	 1998,
  volume =	 5,
  number =	 10,
  pages =	 3632
}


@InProceedings{milligen-1999,
  author = 	 "van Milligen, B Ph and Carreras, B A and Antoni, V and others",
  title = 	 {{Long-Range Correlation Analysis of Plasma Turbulence}},
  booktitle =	 {26th EPS Conf. on Contr. Fusion and Plasma Physics, Maastricht},
  year =	 1999
}

@Article{devynck-2000,
  author = 	 "Devynck, P and Wang, G and Antar, G and Bonhomme, G",
  title = 	 {{The Hurst exponent and long-time correlation}},
  journal = 	 POP,
  year = 	 2000,
  volume =	 7,
  pages =	 1181
}

@InProceedings{antar-2003,
  author = 	 "Antar, G Y and Counsell, G and Yu, Y and Devynck, P",
  title = 	 {{Universality of intermittent convective transport in the scrape-off layer of magnetically confined devices}},
  key =		 {P-3.172},
  booktitle =	 {$30^{th}$ EPS Conference on Contr. Fusion and Plasma Phys.},
  year =	 2003,
  volume =	 {27A}
}


@Article{hnat-2002,
  author = 	 "Hnat, B and Chapman, S C and Rowlands, G",
  title = 	 {Intermittency, scaling and the Fokker-Planck approach to fluctuations of the solar wind bulk plasma parameters as seen by the {WIND} spacecraft},
  journal = 	 {Phys. Rev. E},
  year = 	 2002,
  volume =	 67
}

@Article{greenhough-2002,
  author = 	 "Greenhough, J and Chapman, S C and Chaty, S and Dendy, R O and Rowlands, G",
  title = 	 {Characterising anomalous transport in accretion disks from X-ray observations},
  journal = 	 {A\&A},
  year = 	 2002,
  volume =	 385,
  pages =	 {693-700}
}


@Article{greenhough-2003-1,
  author = 	 "Greenhough, J and Chapman, S C and Chaty, S and Dendy, R O and Rowlands, G",
  title = 	 {},
  journal = 	 {Mon. Not. R. Astron. Soc.},
  year = 	 2003,
  volume =	 340,
  pages =	 {851-855}
}

@PhdThesis{greenhough-2003-2,
  author = 	 "Greenhough, J",
  title = 	 {Signatures of highly-correlated processes in complex physical systems},
  school = 	 {University of Warwick},
  year = 	 2003
}

@InProceedings{sykes-2002,
  author = 	 "Sykes, A and others",
  title = 	 {{Results from the MAST Spherical Tokamak}},
  booktitle =	 {19th SOFE, Atlantic City},
  year =	 2002
}

@Article{lloyd-2003,
  author = 	 "Lloyd, B and {the MAST team} and others",
  title = 	 {Overview of recent experimental results on {MAST}},
  journal = 	 NUF,
  year = 	 2003,
  volume =	 43,
  pages =	 1665
}

@Article{lloyd-2004,
  author = 	 "Lloyd, B and {the MAST team} and others",
  title = 	 {{MAST} and the impact of low aspect ratio on tokamak physics},
  journal = 	 PPCF,
  year = 	 2004,
  volume =	 46,
  pages =	 {B477}
}

@Article{sykes-2001,
  author = 	 "Sykes, A and others",
  title = 	 {First results from {MAST}},
  journal = 	 NUF,
  year = 	 2001,
  volume =	 41,
  pages =	 1423
}


@Article{yang-2003,
  author = 	 "Yang, Y and Counsell, G and {The MAST Team}",
  title = 	 {Observations with a mid-plane reciprocating probe in {MAST}},
  journal = 	 JNM,
  year = 	 2003,
  pages =	 {313-316}
}

@Article{chechkin-2000,
  author = 	 "Chechkin, A V and Gonchar, V Yu",
  title = 	 {{A model for persistent Levy motion}},
  journal = 	 {Physics A},
  year = 	 2000,
  volume =	 277,
  pages =	 {312-326}
}

@Article{carreras-1999-1,
  author = 	 "Carreras, B A and others",
  title = 	 {{Self-Similarity Properties of the Probability Distribution Function of Turbulence-Induced Particle Fluxes at the Plasma Edge}},
  journal = 	 {Phys. Rev. Lett.},
  year = 	 1999,
  volume =	 83,
  pages =	 {3653-3656}
}

@Book{addison,
  author =	 "Addison, P S",
  title = 	 {Fractals and Chaos},
  publisher = 	 {Institute of Physics},
  year = 	 1997,
  key =		 {ISBN 0-7503-0400-6}
}

@Book{press-1999,
  author =	 "Press, W H and Teukolsky, S A and Vetterling, W T and Flannery, B P",
  title = 	 {{Numerical recipes in C. The art of scientific computing}},
  publisher = 	 CUP,
  year = 	 1999,
  key =		 {ISBN --521-43108-5}
}

@Article{schepers-1992,
  author = 	 "Schepers, H E and van Beek, J H G M and Bassingthwaighte, J B",
  title = 	 {Four methods to estimate the fractal dimension from self-affine signals},
  journal = 	 {IEEE Eng. Med. Biol. Mag.},
  year = 	 1992,
  volume =	 11,
  pages =	 57
}

@Article{carreras-1999-2,
  author = 	 "Carreras, B A and others",
  title = 	 {Experimental evidence of long-range correlations and self-similarity in plasma fluctuations},
  journal = 	 {Phys. Plasmas},
  year = 	 1999,
  volume =	 6,
  pages =	 1885
}


@Article{bak-1987,
  author = 	 "Bak, P and Tang, C and Wiesenfeld, K",
  title = 	 {Self-organized criticality: An explanation of the 1/f noise},
  journal = 	 {Physical Rev. Lett.},
  year = 	 1987,
  volume =	 59,
  number =	 4,
  pages =	 381
}

@Article{greenhough-2003-3,
  author = 	 "Greenhough, J and Chapman, S C and Dendy, R O and Ward, D J",
  title = 	 {unknown title},
  journal = 	 PPCF,
  year = 	 2003,
  volume =	 45,
  pages =	 747
}

@Article{greenhough-2003-4,
  author = 	 "Greenhough, J and Chapman, S C and Dendy, R O and Nakariakov, V M and Rowlands, G",
  title = 	 {unknown title},
  journal = 	 {A\&A},
  year = 	 2003,
  volume =	 409,
  pages =	 217
}

@Article{milligen-2000,
  author = 	 "van Milligen, B Ph and Hidalgo, C and Carreras, B A",
  title = 	 {Comment on ``The Hurst exponent and long-time correlation''},
  journal = 	 POP,
  year = 	 2000,
  volume =	 7,
  number =	 12,
  pages =	 5267
}

@Article{gilmore-2002,
  author = 	 "Gilmore, M and Yu, C X and Rhodes, T L and Peebles, W A",
  title = 	 {Investigation of rescaled range analysis, the Hurst exponent, and long-time correlations in plasma turbulence},
  journal = 	 POP,
  year = 	 2002,
  volume =	 9,
  pages =	 1312
}

@Misc{mathworld,
  author =	 {Wolfram},
  title =	 {Mathworld},
  howpublished = {http://mathworld.wolfram.com}
}

@Book{gradshteyn-2000,
  author =	 "Gradshteyn, I S and Ryzhik, I M",
  title = 	 {Table of Integrals, Series, and Products},
  publisher = 	 {Academic Press Inc., U.S.},
  year = 	 2000,
  key =		 {ISBN 0-12-294757-6},
  edition =	 6
}

@Article{sanchez-2001,
  author = 	 "Sanchez, R and Newman, D E and Carreras, B A",
  title = 	 {Mixed {SOC} diffusive dynamics as a paradigm for transport in fusion devices},
  journal = 	 NUF,
  year = 	 2001,
  volume =	 41,
  number =	 3
}

@Article{biskamp-1995,
  author = 	 "Biskamp, D",
  title = 	 {Scaling Properties in {MHD} Turbulence},
  journal = 	 {Chaos, Solitons and Fractals},
  year = 	 1995,
  volume =	 5,
  number =	 10,
  pages =	 {1779-1793}
}

@Article{gurevich-1991,
  author = 	 "Gurevich, A and Zybin, K and Luk'yanov, A and Nebel, R",
  title = 	 {Correlation properties of {MHD} turbulence},
  journal = 	 {Sov. Phys. JETP},
  year = 	 1991,
  volume =	 73,
  number =	 6,
  pages =	 976
}

@InProceedings{milligen-1998,
  author = 	 "van Milligen, B Ph and Carreras, B A and Pedrosa, M A and others",
  title = 	 {Long-range correlations and universality in plasma edge turbulence},
  booktitle =	 {IAEA 17th Fusion Energy Conference},
  address =      {Yokohama, Japan},
  year =	 1998,
  key =          {TH2/07}
}


@Book{kampen-1983,
  author =	 "van Kampen, N G",
  title = 	 {Stochastic processes in physics and chemistry},
  publisher = 	 {North-Holland},
  year = 	 1983,
  key =		 {ISBN 0-444-86650-7}
}

@Article{wesson-1,
  author = 	 "Wesson, J A",
  title = 	 {Snakes},
  journal = 	 PPCF,
  year = 	 1995,
  volume =	 37,
  number =	 {11A},
  pages =	 {A337-A346}
}

%% Image analysis methods

@Article{kocsis-2004,
  author = 	 "Kocsis, G and others",
  title = 	 {{A fast framing camera system for observation of acceleration and ablation of cryogenic hydrogen pellet in ASDEX Upgrade plasmas}},
  journal = 	 RSI,
  year = 	 2004,
  volume =	 75,
  number =	 11,
  pages =	 {4754-4762},
  month =	 {November}
}

@Article{rudakov-2005,
  author = 	 "Rudakov, D L and Boedo, J A and Moyer, R A and Stangeby, P C and others",
  title = 	 {Far {SOL} transport and main wall plasma interaction in {DIII-D}},
  journal = 	 NUF,
  year = 	 2005,
  volume =	 45,
  pages =	 {1589-1599}
}

@Article{zweben-2006,
  author = 	 "Zweben, S J and Maqueda, R J and Terry, J L and Munsat, T and Myra, J R and D'Ippolito, D and Russel, D A and Krommes, J A and LeBlanc, B and Stoltzfus-Dueck, T and Stotler, D P and Williams, K M and Bush, C E and Maingi, R and Grulke, O and Sabbagh, S A and White, A E",
  title = 	 {Structure and motion of edge turbulence in the National Spherical Torus Experiment and {Alcator C-Mod}},
  journal = 	 POP,
  year = 	 2006,
  key =		 056114,
  volume =	 13
}



@Article{fung-2003,
  author = 	 "Fung, G S K and Yung, N H C and Pang, G K H",
  title = 	 {Camera calibration from road lane markings},
  journal = 	 {Opt.Eng.},
  year = 	 2003,
  volume =	 42,
  number =	 10,
  pages =	 {2967-2977},
  month =	 {October}
}

@Article{maqueda-1999,
  author = 	 "Maqueda, R J and Wurden, G A",
  title = 	 {Fast imaging of visible phenomena in {TFTR}},
  journal = 	 NUF,
  year = 	 1999,
  volume =	 39,
  pages =	 {629-636}
}

@Article{zweben-2002,
  author = 	 "Zweben, S J and Stotler, D P and Terry, J L and LaBombard, B and Greenwald, M and Muterspaugh, M and Pitcher, C S and Hallatschek, K and Maqueda, R J and Rogers, B and Lowrance, J L and Matrocola, V J and Renda, G F",
  title = 	 {Edge turbulence imaging in the {Alcator C-Mod} tokamak},
  journal = 	 POP,
  year = 	 2002,
  volume =	 9,
  number =	 5,
  pages =	 {1981-1989}
}

@Article{mckee-1999,
  author = 	 "McKee, G and Ashley, R and Durst, R and Fonck, R and Jakubowski, M and Tritz, K and Burrell, K and Greenfield, C and Robinson, J",
  title = 	 {The beam emission spectroscopy diagnostic on the {DIII-D} tokamak},
  journal = 	 {Review of Scientific Instruments},
  year = 	 1999,
  volume =	 70,
  number =	 1,
  pages =	 {913-916}
}

@Article{maqueda-2001,
  author = 	 "Maqueda, R J and Wurden, G A and Zweben, S and Roquemore, L and Kugel, H and Johnson, D and Kaye, S and Sabbagh, S and Maingi, R",
  title = 	 {Edge turbulence measurements in {NSTX} by gas puff imaging},
  journal = 	 {Review of Scientific Instruments},
  year = 	 2001,
  volume =	 72,
  pages =	 {931-934}
}

@Article{stotler-2004,
  author = 	 "Stotler, D P and D'Ippolito, D A and LeBlanc, B and Maqueda, R J and Myra, J R and Sabbagh, S A and Zweben, S J",
  title = 	 {Three-Dimensional Neutral Transport Simulations of Gas Puff Imaging Experiments},
  journal = 	 {Contrib. Plasma Phys.},
  year = 	 2004,
  volume =	 44,
  pages =	 {294-300}
}

@Article{zweben-2004,
  author = 	 "Zweben, S J and Maqueda, R J and Stotler, D P and Keesee, A and Boedo, J and Bush, C E and Kaye, S M and LeBlanc, B and Lowrance, J L and Matrocola, V J and Maingi, R and Nishino, N and Renda, G and Swain, D W and Wilgen, J B",
  title = 	 {High-speed imaging of edge turbulence in {NSTX}},
  journal = 	 NUF,
  year = 	 2004,
  volume =	 44,
  pages =	 {134-153}
}

@Article{goodall-1982,
  author = 	 "Goodall, D H J",
  title = 	 {High speed cine film studies of plasma behaviour and plasma surface interactions in tokamaks},
  journal = 	 {Nucl. Materials},
  year = 	 1982,
  volume =	 111,
  pages =	 {11-22}
}

@Article{myra-2006,
  author = 	 "Myra, J R and D'Ippolito, D A and Stotler, D P and Zweben, S J and LeBlanc, B P and Menard, J E and Maqueda, R J and Boedo, J",
  title = 	 {Blob birth and transport in the tokamak edge plasma: analysis of imaging data},
  journal = 	 {Submitted to POP},
  year = 	 2006,
  month =	 {June}
}

@Article{grulke-2006,
  author = 	 "Grulke, O and Terry, J L and LaBombard, B and Zweben, S J",
  title = 	 {{Radially propagating fluctuation structures in the scrape-off layer of Alcator C-Mod}},
  journal = 	 POP,
  year = 	 2006,
  volume =	 13
}

@Article{terry-2005,
  author = 	 "Terry, J L and Basse, N P and Cziegler, I and Greenwald, M and Grulke, O and LaBombard, B and Zweben, S J and Edlund, E M and Hughes, J W and Lin, L and Lin, Y and Porkolab, M and Sampsell, M and Veto, B and Wukitch, S J",
  title = 	 {Transport phenomena in the edge of {Alcator C-Mod} plasmas},
  journal = 	 NUF,
  year = 	 2005,
  volume =	 45,
  pages =	 {1321-1327}
}

@Article{kirk-2006,
  author = 	 "Kirk, A and Koch, B and Scannell, R and Wilson, H R and Counsell, G and Dowling, J and Hermann, A and Martin, R and Walsh, M",
  title = 	 {Evolution of Filament Structures during Edge-Localized Modes in the {MAST} Tokamak},
  journal = 	 PRL,
  year = 	 2006,
  pages =	 185001,
  volume =	 96,
  month =	 {May}
}

@Article{scarabosio-2006,
  author = 	 "Scarabosio, A and Bortolon, A and Duval, B P and Karpushov, A and Pochelon, A",
  title = 	 {Toroidal plasma rotation in the {TCV} tokamak},
  journal = 	 PPCF,
  year = 	 2006,
  volume =	 48,
  pages =	 {663-683}
}

@Article{labombard-2004,
  author = 	 "LaBombard, B and Rice, J E and Hubbard A E and Hughes, J W and Greenwald, M and Irby, J and Lin, Y and Lipschultz, B and Marmar, E S and Pitcher, C S and Smick, N and Wolfe, S M and Wukitch, S J and {the Alcator Group}",
  title = 	 {Transport-driven Scrape-Off-Layer flows and the boundary conditions imposed at the magnetic separatrix in a tokamak plasma},
  journal = 	 NUF,
  year = 	 2004,
  volume =	 44,
  pages =	 {1047-1066}
}

@Article{courant-1967,
  author = 	 "Courant, R and Friedrichs, K and Lewy, H",
  title = 	 {{On the partial difference equations of mathematical physics}},
  journal = 	 {{IBM Journal}},
  year = 	 1967,
  pages =	 {pp 215-234},
  month =	 {March},
  note =	 {Translation of 1928 german original}
}

@Article{torrence-1998,
  author = 	 "Torrence, C and Compo, G P",
  title = 	 {{A Practical Guide to Wavelet Analysis}},
  journal = 	 {{Bulletin of the American Meteorological Society}},
  year = 	 1998,
  volume =	 79,
  number =	 1,
  pages =	 {61-78}
}

%% Appendices

@Book{haeseler-1,
  author =	 "Haeseler, W D",
  title = 	 {Flux Coordinates and Magnetic Field Structure},
  publisher = 	 {Springer},
  year = 	 1991,
  key =		 {ISBN}
}

@Book{laney-1,
  author =	 "Laney, C B",
  title = 	 {Computational Gasdynamics},
  publisher = 	 CUP,
  year = 	 1998,
  key =		 {ISBN 0-521-62558-0}
}

%% My papers (author or co-author)
@Article{dudson-2005,
  author = 	 "Dudson, B D and Dendy, R O and Kirk, A and Meyer, H and Counsell, G F",
  title = 	 {Comparison of {L and H-Mode} plasma edge fluctuations in {MAST}},
  journal = 	 PPCF,
  year = 	 {2005},
  volume =	 {47},
  pages =	 {885-901}
}

@InProceedings{dudson-2005-eps,
  author = 	 "Dudson, B D and Kirk, A and Dendy, R O and Counsell, G F and Umansky, M V and Rognlien, T D and Xu, X Q",
  title = 	 {Statistical analysis of plasma edge fluctuations in {MAST} and comparison with {BOUT} simulation results},
  booktitle =	 {32nd EPS Conference on Plasma Physics, Tarragona, Spain},
  year =	 2005
}

@InProceedings{counsell-2006,
  author = 	 "Counsell, G F and ben Ayed, N and Dendy, R O and Dudson, B D and Hnat, B and Kirk, A and Lisgo, S and Rognlien, T D and Scannell, R and Tallents, S and Umansky, M V and Xu, X Q",
  title = 	 {Analysis of {L-mode} turbulence in the {MAST} boundary plasma},
  booktitle =	 {21st Fusion Energy Conference},
  year =	 {2006},
  address =	 {Chengdu, China},
  organization = {IAEA}
}

@InProceedings{hnat-2006,
  author = 	 "Hnat, B and Dudson, B D and Dendy, R O and Counsell, G F and Kirk, A",
  title = 	 {Characterisation of edge turbulence in {L-mode} plasmas in the Mega Amp Spherical Tokamak},
  booktitle =	 {{$33^{rd}$ EPS Conference on Plasma Physics, Rome, Italy}},
  year =	 2006
}

@Article{kirk-2006-2,
  author = 	 "Kirk, A and {Ben Ayed}, N and Counsell, G and Dudson, B and Eich, T and Herrmann, A and Koch, B and Martin, R and Meakins, A and Saarelma, S and Scannell, R and Tallents, S and Walsh, M and Wilson, H R",
  title = 	 {Filament structures at the plasma edge on {MAST}},
  journal = 	 PPCF,
  year = 	 2006,
  volume =	 48,
  pages =	 {B433-B441}
}

@Manual{bout_manual,
  title = 	 {{BOUT Code Manual}},
  key =		 {UCRL-WEB-22191},
  author =	 "Umansky, M V and Xu, X Q and Dudson, B and LoDestro, L L",
  organization = {{LLNL}},
  month =	 {June},
  year =	 2006,
  note =	 {Available from www.mfescience.org/bout/}
}

@Article{umansky-2006-bout,
  author = 	 "Umansky, M V and LoDestro, L L and Xu, X Q",
  title = 	 {{Status of BOUT fluid turbulence code: improvements and verification}},
  journal = 	 {{Bull. Amer. Phys. Soc.}},
  year = 	 2006,
  volume =	 51,
  number =	 7,
  pages =	 262
}

@Article{umansky-2008-bout,
  author = 	 "Umansky, M V and Xu, X Q and Dudson, B and LoDestro, L L and Myra, J R",
  title = 	 "Status and verification of edge plasma turbulence code BOUT",
  journal = 	 CPC,
  year = 	 2008,
  pages =        {doi:10.1016/j.cpc.2008.12.012}
}

% Plasma models


@Article{chankin-2006,
  author = 	 "Chankin, A V and Stangeby, P C",
  title = 	 {Particle and parallel momentum balance equations with inclusion of drifts, for modelling strong- to weakly-collisional edge plasmas},
  journal = 	 NUF,
  year = 	 2006,
  volume =	 46,
  pages =	 {975-993}
}

@Article{simakov-2004-2,
  author = 	 "Simakov, A N and Catto, P J",
  title = 	 {Drift-ordered fluid equations for modelling collisional edge plasma},
  journal = 	 CPP,
  year = 	 2004,
  volume =	 44,
  number =	 {1-3},
  pages =	 {83-94}
}

